examples/extended/medical/dna/neuron/include/RunAction.hh

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// * This  code  implementation is the result of  the  scientific and *
// * technical work of the GEANT4 collaboration.                      *
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//
// This example is provided by the Geant4-DNA collaboration
// Any report or published results obtained using the Geant4-DNA software
// shall cite the following Geant4-DNA collaboration publication:
// Med. Phys. 37 (2010) 4692-4708
// and papers
// M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
// O. Belov et al. Physica Medica 32 (2016) 1510-1520
// The Geant4-DNA web site is available at http://geant4-dna.org
// 
// -------------------------------------------------------------------
// November 2016
// -------------------------------------------------------------------
//
// $ID$

#ifndef RunAction_h
#define RunAction_h 1

#include "G4UserRunAction.hh"
#include "globals.hh"
#include <iostream>
#include "DetectorConstruction.hh"
//
#include "G4ThreeVector.hh"
//class NeuronHitCompartments;
//class NeuronLoadDataFile;
class PrimaryGeneratorAction;
class Run;
class G4Run;
class TrackingAction;

class RunAction : public G4UserRunAction
{
public:
  
  RunAction(DetectorConstruction*, PrimaryGeneratorAction*);
  virtual ~RunAction();

  virtual void BeginOfRunAction(const G4Run*);
  virtual void EndOfRunAction(const G4Run*);
//
  void  SetRndmFreq(G4int   val)  {fSaveRndm = val;}
  G4int GetRndmFreq()             {return fSaveRndm;}
  virtual G4Run* GenerateRun();   
  
// Edep in all volume
  G4double GetEdepALL(){return fEdepAll;}
  void SetEdepALL(G4double vall){ fEdepAll = vall;}
  void AddEdepALL (G4double vall)
  { 
   fEdepAll += vall; 
   fEdepAll_err += vall*vall;
  }
// 0. Edep in homogeneous Medium
  G4double GetEdepMedium(){return fEdepMedium;}
  void SetEdepMedium(G4double vall){ fEdepMedium = vall;}
  void AddEdepMedium (G4double vall)
  { 
   fEdepMedium += vall; 
   fEdepMedium_err += vall*vall;
  }  
// 1. Edep in Bounding Slice Volume
  G4double GetEdepSlice(){return fEdepSlice;}
  void SetEdepSlice(G4double vall){ fEdepSlice = vall;}
  void AddEdepSlice (G4double vall)
  { 
   fEdepSlice += vall; 
   fEdepSlice_err += vall*vall;
  }
// 2. Edep in Soma volume
  G4double GetEdepSoma(){return fEdepSoma;}
  void SetEdepSoma(G4double vall){ fEdepSoma = vall;}
  void AddEdepSoma (G4double vall)
  { 
   fEdepSoma += vall; 
   fEdepSoma_err += vall*vall;
  }
    
// 3. Edep in Dendrites volume
  G4double GetEdepDend(){return fEdepDend;}
  void SetEdepDend(G4double vall){ fEdepDend = vall;}
  void AddEdepDend (G4double vall)
  { 
   fEdepDend += vall; 
   fEdepDend_err += vall*vall;
  }
  
// 4. Edep in Axon volume
  G4double GetEdepAxon(){return fEdepAxon;}
  void SetEdepAxon(G4double vall){ fEdepAxon = vall;}
  void AddEdepAxon (G4double vall)
  { 
   fEdepAxon += vall; 
   fEdepAxon_err += vall*vall;
  }
  
// 5. Edep in whole Neuron volume
  G4double GetEdepNeuron(){return fEdepNeuron;}
  void SetEdepNeuron(G4double vall){ fEdepNeuron = vall;}
  void AddEdepNeuron (G4double vall)
  { 
   fEdepNeuron += vall; 
   fEdepNeuron_err += vall*vall;
  }  
  
  G4int GetNumEvent(){return fNumEvent;}
  void SetNumEvent(G4int i){fNumEvent = i;}  

private:

  // Histogramming
  //
  void CreateHistogram();
  void WriteHistogram();

  // Print Info
  //
  void PrintRunInfo(const G4Run* run);

  // Attributes
  //
  //TrackingAction* fpTrackingAction;
  //bool fInitialized;
  bool fDebug;

 DetectorConstruction*   fDetector;
 PrimaryGeneratorAction* fPrimary;
 //NeuronLoadDataFile * fNeuronLoadParamz;  
 //NeuronHitCompartments* fCompart; 
 Run*                       fRun; 
  
//
// phys 
  G4double fEdepAll,  fEdepAll_err,fEdepMedium, fEdepMedium_err, fEdepSlice,  
  fEdepSlice_err,fEdepSoma,fEdepSoma_err, fEdepDend,  fEdepDend_err,fEdepAxon,  
  fEdepAxon_err,fEdepNeuron,  fEdepNeuron_err;
  G4int fNumEvent;
  G4int fSaveRndm;
   
};

#endif